B4U80_02324 protein (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B4U80_02324

Uncharacterized protein. (218 aa)

Predicted Functional Partners:

B4U80_04839

0.998

B4U80_03092

0.997

B4U80_01537

0.997

B4U80_07046

0.997

B4U80_00942

0.987

B4U80_01273

0.987

B4U80_05282

0.961

B4U80_09867

0.944

B4U80_10119

0.937

B4U80_01336

0.934

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_00942	B4U80_01273	A0A443S7P5	A0A443SUX8	Charged multivesicular body protein 6-like isoform X1.	Charged multivesicular body protein 5-like protein.	0.947
B4U80_00942	B4U80_01336	A0A443S7P5	A0A443SK42	Charged multivesicular body protein 6-like isoform X1.	Uncharacterized protein.	0.843
B4U80_00942	B4U80_01537	A0A443S7P5	A0A443SR40	Charged multivesicular body protein 6-like isoform X1.	Vacuolar protein sorting-associated protein 4B-like protein; Belongs to the AAA ATPase family.	0.998
B4U80_00942	B4U80_02324	A0A443S7P5	A0A443SJR9	Charged multivesicular body protein 6-like isoform X1.	Uncharacterized protein.	0.987
B4U80_00942	B4U80_03092	A0A443S7P5	A0A443SLE1	Charged multivesicular body protein 6-like isoform X1.	Charged multivesicular body protein 4b-like protein.	0.997
B4U80_00942	B4U80_04839	A0A443S7P5	A0A443S0X0	Charged multivesicular body protein 6-like isoform X1.	Charged multivesicular body protein 1b-like protein.	0.955
B4U80_00942	B4U80_05282	A0A443S7P5	A0A443SJ28	Charged multivesicular body protein 6-like isoform X1.	IST1-like protein.	0.932
B4U80_00942	B4U80_07046	A0A443S7P5	A0A443SV06	Charged multivesicular body protein 6-like isoform X1.	Charged multivesicular body protein 3-like protein.	0.985
B4U80_00942	B4U80_09867	A0A443S7P5	A0A443SHE7	Charged multivesicular body protein 6-like isoform X1.	Hepatocyte growth factor-regulated tyrosine kinase substrate-like protein.	0.611
B4U80_00942	B4U80_10119	A0A443S7P5	A0A443SKH9	Charged multivesicular body protein 6-like isoform X1.	Vacuolar protein-sorting-associated protein 36-like protein.	0.993
B4U80_01273	B4U80_00942	A0A443SUX8	A0A443S7P5	Charged multivesicular body protein 5-like protein.	Charged multivesicular body protein 6-like isoform X1.	0.947
B4U80_01273	B4U80_01336	A0A443SUX8	A0A443SK42	Charged multivesicular body protein 5-like protein.	Uncharacterized protein.	0.998
B4U80_01273	B4U80_01537	A0A443SUX8	A0A443SR40	Charged multivesicular body protein 5-like protein.	Vacuolar protein sorting-associated protein 4B-like protein; Belongs to the AAA ATPase family.	0.979
B4U80_01273	B4U80_02324	A0A443SUX8	A0A443SJR9	Charged multivesicular body protein 5-like protein.	Uncharacterized protein.	0.987
B4U80_01273	B4U80_03092	A0A443SUX8	A0A443SLE1	Charged multivesicular body protein 5-like protein.	Charged multivesicular body protein 4b-like protein.	0.996
B4U80_01273	B4U80_04839	A0A443SUX8	A0A443S0X0	Charged multivesicular body protein 5-like protein.	Charged multivesicular body protein 1b-like protein.	0.996
B4U80_01273	B4U80_05282	A0A443SUX8	A0A443SJ28	Charged multivesicular body protein 5-like protein.	IST1-like protein.	0.981
B4U80_01273	B4U80_07046	A0A443SUX8	A0A443SV06	Charged multivesicular body protein 5-like protein.	Charged multivesicular body protein 3-like protein.	0.980
B4U80_01273	B4U80_09867	A0A443SUX8	A0A443SHE7	Charged multivesicular body protein 5-like protein.	Hepatocyte growth factor-regulated tyrosine kinase substrate-like protein.	0.456
B4U80_01273	B4U80_10119	A0A443SUX8	A0A443SKH9	Charged multivesicular body protein 5-like protein.	Vacuolar protein-sorting-associated protein 36-like protein.	0.591