B4U80_01413 protein (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B4U80_01413

Heat shock 70 kDa protein 12A-like protein. (667 aa)

Predicted Functional Partners:

B4U80_07906

0.870

B4U80_07904

0.870

B4U80_11167

0.854

B4U80_10151

0.829

B4U80_06425

0.817

B4U80_14676

0.779

B4U80_11347

0.754

B4U80_00476

0.749

B4U80_04922

0.749

B4U80_08749

0.747

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_00476	B4U80_01413	A0A443RZI6	A0A443SLB3	Dynamin-binding protein-like protein.	Heat shock 70 kDa protein 12A-like protein.	0.749
B4U80_01413	B4U80_00476	A0A443SLB3	A0A443RZI6	Heat shock 70 kDa protein 12A-like protein.	Dynamin-binding protein-like protein.	0.749
B4U80_01413	B4U80_04922	A0A443SLB3	A0A443SF02	Heat shock 70 kDa protein 12A-like protein.	Dynamin-binding protein-like protein.	0.749
B4U80_01413	B4U80_06425	A0A443SLB3	A0A443S708	Heat shock 70 kDa protein 12A-like protein.	Heat shock protein 83-like protein.	0.817
B4U80_01413	B4U80_07904	A0A443SLB3	A0A443SPF6	Heat shock 70 kDa protein 12A-like protein.	Cyclin-G-associated kinase-like protein.	0.870
B4U80_01413	B4U80_07906	A0A443SLB3	A0A443SPE0	Heat shock 70 kDa protein 12A-like protein.	Cyclin-G-associated kinase-like protein.	0.870
B4U80_01413	B4U80_08749	A0A443SLB3	A0A443RXA5	Heat shock 70 kDa protein 12A-like protein.	Heat shock cognate 71 kDa protein-like protein.	0.747
B4U80_01413	B4U80_10151	A0A443SLB3	A0A443SFY7	Heat shock 70 kDa protein 12A-like protein.	Sar s 28 (Heat shock protein 70-like protein 1).	0.829
B4U80_01413	B4U80_11167	A0A443SLB3	A0A443SQT0	Heat shock 70 kDa protein 12A-like protein.	Sar s 28 (Heat shock protein 70-like protein 6).	0.854
B4U80_01413	B4U80_11347	A0A443SLB3	A0A443SUX4	Heat shock 70 kDa protein 12A-like protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.754
B4U80_01413	B4U80_14676	A0A443SLB3	A0A443RS49	Heat shock 70 kDa protein 12A-like protein.	Uncharacterized protein.	0.779
B4U80_04922	B4U80_01413	A0A443SF02	A0A443SLB3	Dynamin-binding protein-like protein.	Heat shock 70 kDa protein 12A-like protein.	0.749
B4U80_06425	B4U80_01413	A0A443S708	A0A443SLB3	Heat shock protein 83-like protein.	Heat shock 70 kDa protein 12A-like protein.	0.817
B4U80_06425	B4U80_07904	A0A443S708	A0A443SPF6	Heat shock protein 83-like protein.	Cyclin-G-associated kinase-like protein.	0.629
B4U80_06425	B4U80_07906	A0A443S708	A0A443SPE0	Heat shock protein 83-like protein.	Cyclin-G-associated kinase-like protein.	0.629
B4U80_06425	B4U80_08749	A0A443S708	A0A443RXA5	Heat shock protein 83-like protein.	Heat shock cognate 71 kDa protein-like protein.	0.841
B4U80_06425	B4U80_10151	A0A443S708	A0A443SFY7	Heat shock protein 83-like protein.	Sar s 28 (Heat shock protein 70-like protein 1).	0.948
B4U80_06425	B4U80_11167	A0A443S708	A0A443SQT0	Heat shock protein 83-like protein.	Sar s 28 (Heat shock protein 70-like protein 6).	0.908
B4U80_06425	B4U80_11347	A0A443S708	A0A443SUX4	Heat shock protein 83-like protein.	GrpE protein homolog; Essential component of the PAM complex, a complex required for the translocation of transit peptide-containing proteins from the inner membrane into the mitochondrial matrix in an ATP-dependent manner; Belongs to the GrpE family.	0.891
B4U80_06425	B4U80_14676	A0A443S708	A0A443RS49	Heat shock protein 83-like protein.	Uncharacterized protein.	0.912