B4U80_06567 protein (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B4U80_06567

ANK_REP_REGION domain-containing protein. (236 aa)

Predicted Functional Partners:

B4U80_10014

0.666

B4U80_13124

0.662

B4U80_01543

0.611

B4U80_05593

0.611

B4U80_09982

0.605

B4U80_10860

0.575

B4U80_06365

0.575

B4U80_04719

0.574

B4U80_01838

0.565

B4U80_10291

0.558

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_01543	B4U80_06567	A0A443SK80	A0A443SQE2	Myosin-IIIb-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	ANK_REP_REGION domain-containing protein.	0.611
B4U80_01543	B4U80_13124	A0A443SK80	A0A443SC23	Myosin-IIIb-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	Disks large-like protein.	0.976
B4U80_01838	B4U80_04719	A0A443SBH8	A0A443SNS7	Zinc finger FYVE domain-containing protein 16-like protein.	DUF2181 domain containing protein-like protein.	0.562
B4U80_01838	B4U80_06567	A0A443SBH8	A0A443SQE2	Zinc finger FYVE domain-containing protein 16-like protein.	ANK_REP_REGION domain-containing protein.	0.565
B4U80_04719	B4U80_01838	A0A443SNS7	A0A443SBH8	DUF2181 domain containing protein-like protein.	Zinc finger FYVE domain-containing protein 16-like protein.	0.562
B4U80_04719	B4U80_06567	A0A443SNS7	A0A443SQE2	DUF2181 domain containing protein-like protein.	ANK_REP_REGION domain-containing protein.	0.574
B4U80_05593	B4U80_06365	A0A443STR2	A0A443SW82	Intraflagellar transport protein 88-like isoform X1.	Intraflagellar transport protein 57-like protein.	0.996
B4U80_05593	B4U80_06567	A0A443STR2	A0A443SQE2	Intraflagellar transport protein 88-like isoform X1.	ANK_REP_REGION domain-containing protein.	0.611
B4U80_05593	B4U80_09982	A0A443STR2	A0A443SBT4	Intraflagellar transport protein 88-like isoform X1.	Intraflagellar transport protein 52-like protein.	0.997
B4U80_05593	B4U80_10014	A0A443STR2	A0A443SVM9	Intraflagellar transport protein 88-like isoform X1.	Intraflagellar transport protein 81-like protein.	0.995
B4U80_05593	B4U80_10860	A0A443STR2	A0A443SD78	Intraflagellar transport protein 88-like isoform X1.	UBX domain-containing protein 7-like protein.	0.405
B4U80_05593	B4U80_13124	A0A443STR2	A0A443SC23	Intraflagellar transport protein 88-like isoform X1.	Disks large-like protein.	0.776
B4U80_06365	B4U80_05593	A0A443SW82	A0A443STR2	Intraflagellar transport protein 57-like protein.	Intraflagellar transport protein 88-like isoform X1.	0.996
B4U80_06365	B4U80_06567	A0A443SW82	A0A443SQE2	Intraflagellar transport protein 57-like protein.	ANK_REP_REGION domain-containing protein.	0.575
B4U80_06365	B4U80_09982	A0A443SW82	A0A443SBT4	Intraflagellar transport protein 57-like protein.	Intraflagellar transport protein 52-like protein.	0.996
B4U80_06365	B4U80_10014	A0A443SW82	A0A443SVM9	Intraflagellar transport protein 57-like protein.	Intraflagellar transport protein 81-like protein.	0.996
B4U80_06365	B4U80_13124	A0A443SW82	A0A443SC23	Intraflagellar transport protein 57-like protein.	Disks large-like protein.	0.778
B4U80_06567	B4U80_01543	A0A443SQE2	A0A443SK80	ANK_REP_REGION domain-containing protein.	Myosin-IIIb-like protein; Belongs to the TRAFAC class myosin-kinesin ATPase superfamily. Myosin family.	0.611
B4U80_06567	B4U80_01838	A0A443SQE2	A0A443SBH8	ANK_REP_REGION domain-containing protein.	Zinc finger FYVE domain-containing protein 16-like protein.	0.565
B4U80_06567	B4U80_04719	A0A443SQE2	A0A443SNS7	ANK_REP_REGION domain-containing protein.	DUF2181 domain containing protein-like protein.	0.574