B4U80_09886 protein (Leptotrombidium deliense)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

B4U80_09886

Importin-13-like protein. (979 aa)

Predicted Functional Partners:

B4U80_11595

0.976

B4U80_11338

0.969

B4U80_08602

0.969

B4U80_04890

0.966

B4U80_11551

0.963

B4U80_06302

0.962

B4U80_01323

0.866

B4U80_05018

0.851

B4U80_00259

0.616

B4U80_13145

0.611

Your Current Organism:

Leptotrombidium deliense

NCBI taxonomy Id: 299467
Other names: L. deliense, scrub typhus mite

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
B4U80_00259	B4U80_06302	A0A443SRI3	A0A443S8D6	Importin-5-like protein.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.977
B4U80_00259	B4U80_09886	A0A443SRI3	A0A443SWE4	Importin-5-like protein.	Importin-13-like protein.	0.616
B4U80_01323	B4U80_05018	A0A443SR36	A0A443SQW0	Eukaryotic translation initiation factor 1A: X-chromosomal-like protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Eukaryotic translation initiation factor 5A.	0.969
B4U80_01323	B4U80_06302	A0A443SR36	A0A443S8D6	Eukaryotic translation initiation factor 1A: X-chromosomal-like protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.699
B4U80_01323	B4U80_09886	A0A443SR36	A0A443SWE4	Eukaryotic translation initiation factor 1A: X-chromosomal-like protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	Importin-13-like protein.	0.866
B4U80_04890	B4U80_09886	A0A443SH43	A0A443SWE4	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Importin-13-like protein.	0.966
B4U80_04890	B4U80_11551	A0A443SH43	A0A443SR86	RNA-binding protein 8A; Core component of the splicing-dependent multiprotein exon junction complex (EJC) deposited at splice junctions on mRNAs.	Protein mago nashi-like protein.	0.999
B4U80_05018	B4U80_01323	A0A443SQW0	A0A443SR36	Eukaryotic translation initiation factor 5A.	Eukaryotic translation initiation factor 1A: X-chromosomal-like protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.969
B4U80_05018	B4U80_06302	A0A443SQW0	A0A443S8D6	Eukaryotic translation initiation factor 5A.	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	0.981
B4U80_05018	B4U80_09886	A0A443SQW0	A0A443SWE4	Eukaryotic translation initiation factor 5A.	Importin-13-like protein.	0.851
B4U80_05018	B4U80_13145	A0A443SQW0	A0A443SBN6	Eukaryotic translation initiation factor 5A.	Exportin-4-like protein.	0.900
B4U80_06302	B4U80_00259	A0A443S8D6	A0A443SRI3	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin-5-like protein.	0.977
B4U80_06302	B4U80_01323	A0A443S8D6	A0A443SR36	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Eukaryotic translation initiation factor 1A: X-chromosomal-like protein; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.	0.699
B4U80_06302	B4U80_05018	A0A443S8D6	A0A443SQW0	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Eukaryotic translation initiation factor 5A.	0.981
B4U80_06302	B4U80_09886	A0A443S8D6	A0A443SWE4	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Importin-13-like protein.	0.962
B4U80_06302	B4U80_11595	A0A443S8D6	A0A443STS5	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	SUMO-conjugating enzyme UBC9-B-like protein; Belongs to the ubiquitin-conjugating enzyme family.	0.900
B4U80_06302	B4U80_13145	A0A443S8D6	A0A443SBN6	GTP-binding nuclear protein; GTP-binding protein involved in nucleocytoplasmic transport. Required for the import of protein into the nucleus and also for RNA export. Involved in chromatin condensation and control of cell cycle. Belongs to the small GTPase superfamily. Ran family.	Exportin-4-like protein.	0.774
B4U80_08602	B4U80_09886	A0A443SB39	A0A443SWE4	Trifunctional purine biosynthetic protein adenosine-3-like protein.	Importin-13-like protein.	0.969
B4U80_08602	B4U80_11338	A0A443SB39	A0A443S2H2	Trifunctional purine biosynthetic protein adenosine-3-like protein.	Trifunctional purine biosynthetic protein adenosine-3-like protein.	0.999
B4U80_09886	B4U80_00259	A0A443SWE4	A0A443SRI3	Importin-13-like protein.	Importin-5-like protein.	0.616