Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_900068845_00021 | GCA_900068845_03757 | GCA_900068845_00021 | GCA_900068845_03757 | Unannotated protein. | Unannotated protein. | 0.860 |
GCA_900068845_00021 | accA | GCA_900068845_00021 | GCA_900068845_00015 | Unannotated protein. | Unannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | 0.862 |
GCA_900068845_00021 | fabZ | GCA_900068845_00021 | GCA_900068845_00020 | Unannotated protein. | Unannotated protein; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.972 |
GCA_900068845_00021 | kdsA | GCA_900068845_00021 | GCA_900068845_01712 | Unannotated protein. | Unannotated protein; Belongs to the KdsA family. | 0.853 |
GCA_900068845_00021 | kdsB | GCA_900068845_00021 | GCA_900068845_03760 | Unannotated protein. | Unannotated protein; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.858 |
GCA_900068845_00021 | lpxA | GCA_900068845_00021 | GCA_900068845_00019 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.979 |
GCA_900068845_00021 | lpxB | GCA_900068845_00021 | GCA_900068845_00018 | Unannotated protein. | Unannotated protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.924 |
GCA_900068845_00021 | lpxC | GCA_900068845_00021 | GCA_900068845_00102 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.863 |
GCA_900068845_00021 | rnhB | GCA_900068845_00021 | GCA_900068845_00017 | Unannotated protein. | Unannotated protein; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids. | 0.673 |
GCA_900068845_00021 | waaA | GCA_900068845_00021 | GCA_900068845_04621 | Unannotated protein. | Unannotated protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.858 |
GCA_900068845_03757 | GCA_900068845_00021 | GCA_900068845_03757 | GCA_900068845_00021 | Unannotated protein. | Unannotated protein. | 0.860 |
GCA_900068845_03757 | fabZ | GCA_900068845_03757 | GCA_900068845_00020 | Unannotated protein. | Unannotated protein; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.416 |
GCA_900068845_03757 | kdsA | GCA_900068845_03757 | GCA_900068845_01712 | Unannotated protein. | Unannotated protein; Belongs to the KdsA family. | 0.858 |
GCA_900068845_03757 | kdsB | GCA_900068845_03757 | GCA_900068845_03760 | Unannotated protein. | Unannotated protein; Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria. | 0.927 |
GCA_900068845_03757 | lpxA | GCA_900068845_03757 | GCA_900068845_00019 | Unannotated protein. | Unannotated protein; Involved in the biosynthesis of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.861 |
GCA_900068845_03757 | lpxB | GCA_900068845_03757 | GCA_900068845_00018 | Unannotated protein. | Unannotated protein; Condensation of UDP-2,3-diacylglucosamine and 2,3- diacylglucosamine-1-phosphate to form lipid A disaccharide, a precursor of lipid A, a phosphorylated glycolipid that anchors the lipopolysaccharide to the outer membrane of the cell. | 0.929 |
GCA_900068845_03757 | lpxC | GCA_900068845_03757 | GCA_900068845_00102 | Unannotated protein. | Unannotated protein; Catalyzes the hydrolysis of UDP-3-O-myristoyl-N- acetylglucosamine to form UDP-3-O-myristoylglucosamine and acetate, the committed step in lipid A biosynthesis; Belongs to the LpxC family. | 0.861 |
GCA_900068845_03757 | waaA | GCA_900068845_03757 | GCA_900068845_04621 | Unannotated protein. | Unannotated protein; Involved in lipopolysaccharide (LPS) biosynthesis. Catalyzes the transfer of 3-deoxy-D-manno-octulosonate (Kdo) residue(s) from CMP- Kdo to lipid IV(A), the tetraacyldisaccharide-1,4'-bisphosphate precursor of lipid A; Belongs to the glycosyltransferase group 1 family. | 0.979 |
accA | GCA_900068845_00021 | GCA_900068845_00015 | GCA_900068845_00021 | Unannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | Unannotated protein. | 0.862 |
accA | fabZ | GCA_900068845_00015 | GCA_900068845_00020 | Unannotated protein; Component of the acetyl coenzyme A carboxylase (ACC) complex. First, biotin carboxylase catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the carboxyltransferase to acetyl-CoA to form malonyl-CoA. | Unannotated protein; Involved in unsaturated fatty acids biosynthesis. Catalyzes the dehydration of short chain beta-hydroxyacyl-ACPs and long chain saturated and unsaturated beta-hydroxyacyl-ACPs. | 0.976 |
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