Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_900068845_01003 | GCA_900068845_01005 | GCA_900068845_01003 | GCA_900068845_01005 | Unannotated protein. | Unannotated protein. | 0.531 |
GCA_900068845_01003 | GCA_900068845_01006 | GCA_900068845_01003 | GCA_900068845_01006 | Unannotated protein. | Unannotated protein. | 0.531 |
GCA_900068845_01003 | accB | GCA_900068845_01003 | GCA_900068845_01008 | Unannotated protein. | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.451 |
GCA_900068845_01003 | accC | GCA_900068845_01003 | GCA_900068845_01007 | Unannotated protein. | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.520 |
GCA_900068845_01003 | aroQ | GCA_900068845_01003 | GCA_900068845_01009 | Unannotated protein. | Unannotated protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.429 |
GCA_900068845_01003 | dusB | GCA_900068845_01003 | GCA_900068845_01002 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.574 |
GCA_900068845_01003 | fis | GCA_900068845_01003 | GCA_900068845_01001 | Unannotated protein. | Unannotated protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.472 |
GCA_900068845_01003 | prmA | GCA_900068845_01003 | GCA_900068845_01004 | Unannotated protein. | Unannotated protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.538 |
GCA_900068845_01005 | GCA_900068845_01003 | GCA_900068845_01005 | GCA_900068845_01003 | Unannotated protein. | Unannotated protein. | 0.531 |
GCA_900068845_01005 | GCA_900068845_01006 | GCA_900068845_01005 | GCA_900068845_01006 | Unannotated protein. | Unannotated protein. | 0.821 |
GCA_900068845_01005 | GCA_900068845_01012 | GCA_900068845_01005 | GCA_900068845_01012 | Unannotated protein. | Unannotated protein. | 0.467 |
GCA_900068845_01005 | accB | GCA_900068845_01005 | GCA_900068845_01008 | Unannotated protein. | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.635 |
GCA_900068845_01005 | accC | GCA_900068845_01005 | GCA_900068845_01007 | Unannotated protein. | Unannotated protein; This protein is a component of the acetyl coenzyme A carboxylase complex; first, biotin carboxylase catalyzes the carboxylation of the carrier protein and then the transcarboxylase transfers the carboxyl group to form malonyl-CoA. | 0.806 |
GCA_900068845_01005 | aroQ | GCA_900068845_01005 | GCA_900068845_01009 | Unannotated protein. | Unannotated protein; Catalyzes a trans-dehydration via an enolate intermediate. Belongs to the type-II 3-dehydroquinase family. | 0.670 |
GCA_900068845_01005 | dusB | GCA_900068845_01005 | GCA_900068845_01002 | Unannotated protein. | Unannotated protein; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the Dus family. DusB subfamily. | 0.800 |
GCA_900068845_01005 | fis | GCA_900068845_01005 | GCA_900068845_01001 | Unannotated protein. | Unannotated protein; Activates ribosomal RNA transcription. Plays a direct role in upstream activation of rRNA promoters; Belongs to the transcriptional regulatory Fis family. | 0.835 |
GCA_900068845_01005 | prmA | GCA_900068845_01005 | GCA_900068845_01004 | Unannotated protein. | Unannotated protein; Methylates ribosomal protein L11; Belongs to the methyltransferase superfamily. PrmA family. | 0.949 |
GCA_900068845_01005 | yedY | GCA_900068845_01005 | GCA_900068845_01011 | Unannotated protein. | Unannotated protein; Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) [...] | 0.409 |
GCA_900068845_01006 | GCA_900068845_01003 | GCA_900068845_01006 | GCA_900068845_01003 | Unannotated protein. | Unannotated protein. | 0.531 |
GCA_900068845_01006 | GCA_900068845_01005 | GCA_900068845_01006 | GCA_900068845_01005 | Unannotated protein. | Unannotated protein. | 0.821 |
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