Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_900068845_00717 | GCA_900068845_04116 | GCA_900068845_00717 | GCA_900068845_04116 | Unannotated protein. | Unannotated protein. | 0.684 |
GCA_900068845_00717 | grxD | GCA_900068845_00717 | GCA_900068845_04138 | Unannotated protein. | Unannotated protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.416 |
GCA_900068845_00717 | iscS | GCA_900068845_00717 | GCA_900068845_02452 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.407 |
GCA_900068845_04116 | GCA_900068845_00717 | GCA_900068845_04116 | GCA_900068845_00717 | Unannotated protein. | Unannotated protein. | 0.684 |
GCA_900068845_04116 | GCA_900068845_04119 | GCA_900068845_04116 | GCA_900068845_04119 | Unannotated protein. | Unannotated protein. | 0.895 |
GCA_900068845_04116 | GCA_900068845_04120 | GCA_900068845_04116 | GCA_900068845_04120 | Unannotated protein. | Unannotated protein. | 0.860 |
GCA_900068845_04116 | GCA_900068845_04121 | GCA_900068845_04116 | GCA_900068845_04121 | Unannotated protein. | Unannotated protein. | 0.788 |
GCA_900068845_04116 | djlA | GCA_900068845_04116 | GCA_900068845_00134 | Unannotated protein. | Unannotated protein; Regulatory DnaK co-chaperone. Direct interaction between DnaK and DjlA is needed for the induction of the wcaABCDE operon, involved in the synthesis of a colanic acid polysaccharide capsule, possibly through activation of the RcsB/RcsC phosphotransfer signaling pathway. The colanic acid capsule may help the bacterium survive conditions outside the host. | 0.680 |
GCA_900068845_04116 | dnaJ | GCA_900068845_04116 | GCA_900068845_00154 | Unannotated protein. | Unannotated protein; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions between DnaJ, DnaK [...] | 0.663 |
GCA_900068845_04116 | grxD | GCA_900068845_04116 | GCA_900068845_04138 | Unannotated protein. | Unannotated protein; Belongs to the glutaredoxin family. Monothiol subfamily. | 0.846 |
GCA_900068845_04116 | iscS | GCA_900068845_04116 | GCA_900068845_02452 | Unannotated protein. | Unannotated protein; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins; Belongs to the class-V pyridoxal-phosphate-dependent aminotransferase family. NifS/IscS subfamily. | 0.624 |
GCA_900068845_04116 | sufB | GCA_900068845_04116 | GCA_900068845_04117 | Unannotated protein. | Unannotated protein. | 0.951 |
GCA_900068845_04116 | sufC | GCA_900068845_04116 | GCA_900068845_04118 | Unannotated protein. | Unannotated protein. | 0.901 |
GCA_900068845_04119 | GCA_900068845_04116 | GCA_900068845_04119 | GCA_900068845_04116 | Unannotated protein. | Unannotated protein. | 0.895 |
GCA_900068845_04119 | GCA_900068845_04120 | GCA_900068845_04119 | GCA_900068845_04120 | Unannotated protein. | Unannotated protein. | 0.985 |
GCA_900068845_04119 | GCA_900068845_04121 | GCA_900068845_04119 | GCA_900068845_04121 | Unannotated protein. | Unannotated protein. | 0.971 |
GCA_900068845_04119 | sufB | GCA_900068845_04119 | GCA_900068845_04117 | Unannotated protein. | Unannotated protein. | 0.990 |
GCA_900068845_04119 | sufC | GCA_900068845_04119 | GCA_900068845_04118 | Unannotated protein. | Unannotated protein. | 0.996 |
GCA_900068845_04120 | GCA_900068845_04116 | GCA_900068845_04120 | GCA_900068845_04116 | Unannotated protein. | Unannotated protein. | 0.860 |
GCA_900068845_04120 | GCA_900068845_04119 | GCA_900068845_04120 | GCA_900068845_04119 | Unannotated protein. | Unannotated protein. | 0.985 |
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