STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF34248.1DNA mismatch repair protein MutT; Derived by automated computational analysis using gene prediction method: Protein Homology. (163 aa)    
Predicted Functional Partners:
APF34249.1
Aldo/keto reductase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.766
APF34246.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.623
APF34247.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.623
rlmN
23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN; Specifically methylates position 2 of adenine 2503 in 23S rRNA and position 2 of adenine 37 in tRNAs; Belongs to the radical SAM superfamily. RlmN family.
       0.596
APF34245.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.512
APF34244.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.496
APF34243.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.493
APF32944.1
3-beta hydroxysteroid dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.485
APF34251.1
Transcriptional antiterminator; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.430
APF34242.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.401
Your Current Organism:
Microbacterium paludicola
NCBI taxonomy Id: 300019
Other names: DSM 16915, JCM 14308, KCTC 19080, M. paludicola, Microbacterium paludicola Park et al. 2006, Microbacterium sp. US15, strain US15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.