STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
APF34857.1Peptide ABC transporter ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (296 aa)    
Predicted Functional Partners:
APF34855.1
Peptide ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 0.993
APF34854.1
Peptide ABC transporter substrate-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
 
 0.984
APF35840.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.943
APF34856.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
 
   
0.859
APF34858.1
Proline iminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.800
APF35572.1
ABC transporter permease; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 0.799
APF34859.1
Xaa-Pro aminopeptidase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.783
APF34861.1
Dihydrodipicolinate synthase family protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.778
APF34860.1
Glycosyl hydrolase; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
APF34260.1
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
 0.767
Your Current Organism:
Microbacterium paludicola
NCBI taxonomy Id: 300019
Other names: DSM 16915, JCM 14308, KCTC 19080, M. paludicola, Microbacterium paludicola Park et al. 2006, Microbacterium sp. US15, strain US15
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.