STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ylaBConserved hypothetical protein; Code: T; COG: COG4943; orf. (437 aa)    
Predicted Functional Partners:
yeaP
Conserved hypothetical protein; Code: T; COG: COG2203; orf.
  
 0.977
yfiN
Conserved hypothetical protein; Code: T; COG: COG2199; orf.
   
 0.977
yaiC
Conserved hypothetical protein; Code: T; COG: COG2199; orf.
   
 0.976
SDY_0462
Hypothetical protein.
 
      0.899
dgcQ
Conserved hypothetical protein; Catalyzes the synthesis of cyclic-di-GMP (c-di-GMP) via the condensation of 2 GTP molecules (By similarity). Cyclic-di-GMP is a second messenger which controls cell surface-associated traits in bacteria. Involved in the regulation of cellulose production (By similarity).
 
   
 0.872
ydeH
Conserved hypothetical protein; Code: T; COG: COG2199; orf.
     0.850
SDY_1423
Conserved hypothetical protein; Code: T; COG: COG2202; orf.
 
   
 0.797
SDY_1684
Hypothetical protein; Code: T; COG: COG2199; orf.
  
   
 0.791
SDY_1629
Conserved hypothetical protein; Code: T; COG: COG2199; orf.
 
   
 0.783
yhjH
Conserved hypothetical protein; Code: T; COG: COG2200; orf.
  
   
 0.783
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
Server load: low (24%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.