STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yejFPutative ATP-binding component of a transport system; Code: R; COG: COG4172; Belongs to the ABC transporter superfamily. (529 aa)    
Predicted Functional Partners:
yejE
Putative transport system permease protein; Code: R; COG: COG4239.
  
 0.977
yejB
Putative transport system permease protein; Code: R; COG: COG4174.
  
 0.967
yejA
Conserved hypothetical protein; Code: E; COG: COG4166; orf.
 
  
 0.961
gsiD
Putative transport system permease protein; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane.
  
 0.958
nikC
Transport of nickel membrane protein; Code: EP; COG: COG1173.
  
 0.958
dppC
Dipeptide transport system permease protein 2; Code: EP; COG: COG1173.
  
 0.945
oppC
OppC; Similar to Salmonella oligopeptide transport permease protein; Code: EP; COG: COG1173.
  
 0.940
sapC
SapC; Similar to Salmonella peptide transport permease protein; Code: V; COG: COG4171.
 
     0.752
ybhS
Conserved hypothetical protein; Code: V; COG: COG0842; orf.
 
      0.710
gsiC
Putative transport system permease protein; Part of the ABC transporter complex GsiABCD involved in glutathione import. Probably responsible for the translocation of the substrate across the membrane.
  
 0.700
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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