STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yccJConserved hypothetical protein. (75 aa)    
Predicted Functional Partners:
wrbA
Affects association of trp repressor and operator; Code: R; COG: COG0655.
 
  
 0.982
elaB
Conserved hypothetical protein; Code: S; COG: COG4575; orf.
   
    0.666
agp
Periplasmic glucose-1-phosphatase.
   
  
 0.658
yqjD
Conserved hypothetical protein; Code: S; COG: COG4575; orf.
   
    0.626
ygaU
Conserved hypothetical protein; Code: S; COG: COG1652; orf.
   
    0.469
yqjC
Conserved hypothetical protein.
   
    0.469
ycgB
Putative sporulation protein; Code: S; COG: COG2719.
   
    0.465
osmY
Hyperosmotically inducible periplasmic protein; Code: R; COG: COG2823.
   
    0.465
rmf
Ribosome modulation factor; During stationary phase, converts 70S ribosomes to an inactive dimeric form (100S ribosomes). May form immature 90S particles, which are converted to mature 100S ribosomes by the hibernation promoting factor Hpf.
   
  
 0.447
ygaM
Conserved hypothetical protein; Code: S; COG: COG4575; orf.
   
    0.422
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.