STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY_1521Hypothetical protein. (189 aa)    
Predicted Functional Partners:
SDY_1522
Hypothetical protein.
     0.987
SDY_1520
Putative transport system permease protein; Code: R; COG: COG4135.
 
  
 0.954
SDY_1519
Putative ATP-binding component of a transport system; Code: R; COG: COG4136.
 
   
 0.893
ydjZ
Conserved hypothetical protein; Code: S; COG: COG0398; orf.
 
  
 0.834
ydjX
Conserved hypothetical protein; Code: S; COG: COG0398; orf.
 
  
 0.830
SDY_1517
Putative cytochrome oxidase; Code: I; COG: COG0558; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
 
     0.787
xthA
Exonuclease III; Code: L; COG: COG0708.
      0.777
ynjA
Conserved hypothetical protein; Code: S; COG: COG2128; orf.
 
  
 0.614
ydjY
Conserved hypothetical protein.
     
 0.527
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.