STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ydfHConserved hypothetical protein; Code: K; COG: COG1802; orf. (228 aa)    
Predicted Functional Partners:
ydfG
Putative oxidoreductase; Code: R; COG: COG4221; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
 
    0.715
yieP
yieP gene product; Code: K; COG: COG2186.
  
  
 0.712
ygaE
Putative transcriptional regulator; Code: K; COG: COG1802.
  
     0.683
exuR
Negative regulator of exu regulon, exuT, uxaAC, and uxuB; Code: K; COG: COG2186.
  
  
 0.664
lldR
Transcriptional regulator; Code: K; COG: COG2186.
  
  
 0.651
yeiQ
Putative oxidoreductase; Code: G; COG: COG0246; Belongs to the mannitol dehydrogenase family.
   
 0.636
uxaA
Altronate hydrolase; Code: G; COG: COG2721.
 
     0.556
pdhR
Transcriptional regulator for pyruvate dehydrogenase complex; Code: K; COG: COG2186.
  
  
 0.532
nadR
Probable nadAB transcriptional regulator; Code: H; COG: COG3172.
   
  
 0.529
SDY_2446
Putative regulator; Code: K; COG: COG1414.
  
    0.522
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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