Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
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[Homology]
Score
yfaLPutative ATP-binding component of a transport system; Code: MU; COG: COG3468. (720 aa)    
Predicted Functional Partners:
SDY_2426
Hypothetical protein.
      0.946
SDY_2427
Hypothetical protein.
      0.926
yejO
Putative ATP-binding component of a transport system; Code: MU; COG: COG3468.
  
     0.764
SDY_2173
Hypothetical protein.
  
     0.760
evgS
Putative sensor for regulator EvgA; Code: ET; COG: COG0834.
  
   
 0.760
SDY_2192
Putative chaperonin; Code: R; COG: COG4248.
  
     0.756
ynbD
YnbD; Putative enzyme; Code: I; COG: COG0671.
  
     0.755
gspM
Putative secretion pathway protein; Code: U; COG: COG3149.
  
     0.754
yhgE
Putative transport.
  
    0.747
rhsC
rhsC protein in rhs element; Code: M; COG: COG3209.
  
    0.745
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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