STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY_2577Putative aminotransferase; Code: E; COG: COG0436. (412 aa)    
Predicted Functional Partners:
thrA
Homoserine dehydrogenase I; Code: E; COG: COG0527; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.569
metL
Aspartokinase II and homoserine dehydrogenase II; Code: E; COG: COG0527; In the C-terminal section; belongs to the homoserine dehydrogenase family.
  
 
 0.569
SDY_2578
Conserved hypothetical protein.
       0.558
SDY_2645
Putative multimodular enzyme; Code: C; COG: COG0281.
  
 
 0.538
pheA
Chorismate mutase-P; Prephenate dehydratase; Code: E; COG: COG0077.
 
  
 0.482
gltB
Glutamate synthase, large subunit; Code: E; COG: COG0069.
  
  
 0.469
lysA
Diaminopimelate decarboxylase; Specifically catalyzes the decarboxylation of meso- diaminopimelate (meso-DAP) to L-lysine.
 
  
 0.467
ydbK
Putative oxidoreductase, Fe-S subunit; Code: C; COG: COG0674.
  
  
 0.465
trpC
N-(5-phosphoribosyl)anthranilate isomerase/indole-3-glycerolphosphate synthetase; Code: E; COG: COG0134; Belongs to the TrpC family.
     
 0.438
tyrA
Chorismate mutase-T; Prephenate dehydrogenase; Code: E; COG: COG0287.
     
 0.417
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.