STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY_2699Putative outer membrane lipoprotein; Code: M; COG: COG3133. (176 aa)    
Predicted Functional Partners:
SDY_2698
iso-IS1 ORF2; Code: L; COG: COG1662.
       0.714
yfaL
Putative ATP-binding component of a transport system; Code: MU; COG: COG3468.
  
     0.680
appA
Phosphoanhydride phosphorylase; pH 2.5 acid phosphatase; periplasmic.
  
     0.643
ypjA
Putative ATP-binding component of a transport system; Code: MU; COG: COG3468.
  
     0.626
ymcB
Conserved hypothetical protein.
  
    0.622
SDY_2173
Hypothetical protein.
  
     0.621
ompA
Outer membrane protein 3a; II*;G;d; Code: M; COG: COG2885; Belongs to the outer membrane OOP (TC 1.B.6) superfamily.
   
  
 0.613
ygjV
Conserved hypothetical protein.
  
     0.590
SDY_2192
Putative chaperonin; Code: R; COG: COG4248.
  
     0.571
ybjX
Putative enzyme; Code: S; COG: COG2990.
  
    0.517
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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