STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
TasConserved hypothetical protein; Code: C; COG: COG0667; orf. (346 aa)    
Predicted Functional Partners:
deoR
Transcriptional repressor for deo operon, tsx, nupG; Code: KG; COG: COG1349.
      
 0.785
SDY_3050
Conserved hypothetical protein.
  
    0.527
yneH
Putative glutaminase; Code: E; COG: COG2066; Belongs to the glutaminase family.
   
  
 0.502
lsrG
Conserved hypothetical protein; Involved in the degradation of phospho-AI-2, thereby terminating induction of the lsr operon and closing the AI-2 signaling cycle. Catalyzes the conversion of (4S)-4-hydroxy-5- phosphonooxypentane-2,3-dione (P-DPD) to 3-hydroxy-5- phosphonooxypentane-2,4-dione (P-HPD); Belongs to the LsrG family.
     
 0.449
yafB
Putative aldose reductase; Code: R; COG: COG0656.
 
 
0.428
SDY_3049
Putative transport protein; Code: P; COG: COG0861.
    
 0.419
mrcA
Peptidoglycan synthetase; Penicillin-binding protein 1A; Code: M; COG: COG5009.
      
 0.400
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.