STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDY_3602Conserved hypothetical protein; Code: S; COG: COG4700; orf. (248 aa)    
Predicted Functional Partners:
SDY_1779
Conserved hypothetical protein; Code: QR; COG: COG0500; orf.
  
     0.539
ybcI
Conserved hypothetical protein; Code: R; COG: COG1988; orf.
  
     0.526
ynbD
YnbD; Putative enzyme; Code: I; COG: COG0671.
  
     0.506
livF
ATP-binding component of leucine transport; Code: E; COG: COG0410; Belongs to the ABC transporter superfamily.
       0.506
livG
ATP-binding component of high-affinity branched-chain amino acid transport system; Code: E; COG: COG0411.
       0.506
livM
High-affinity branched-chain amino acid transport; Code: E; COG: COG4177; Belongs to the binding-protein-dependent transport system permease family.
       0.506
livH
High-affinity branched-chain amino acid transport system, membrane component; Code: E; COG: COG0559; Belongs to the binding-protein-dependent transport system permease family.
       0.506
SDY_1472
Probable enzyme; Code: I; COG: COG0558.
  
     0.497
yijF
Conserved hypothetical protein; Code: S; COG: COG3738; orf.
  
     0.476
livK
High-affinity leucine-specific transport system; Code: E; COG: COG0683.
       0.420
Your Current Organism:
Shigella dysenteriae
NCBI taxonomy Id: 300267
Other names: S. dysenteriae Sd197, Shigella dysenteriae Sd197, Shigella dysenteriae str. Sd197, Shigella dysenteriae strain Sd197
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.