STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEJ29141.1Protein of unknown function. (298 aa)    
Predicted Functional Partners:
SEI87126.1
Lipoprotein NlpD.
 
  
 0.810
SEJ17581.1
Murein DD-endopeptidase MepM and murein hydrolase activator NlpD, contain LysM domain.
  
   
 0.758
SEJ58637.1
Septal ring factor EnvC, activator of murein hydrolases AmiA and AmiB.
 
   
 0.744
AmiC
N-acetylmuramoyl-L-alanine amidase.
 
  
 0.520
SEJ29159.1
Response regulator receiver domain-containing protein.
       0.479
MrcA
Penicillin-binding protein 1A.
  
   
 0.412
SEJ10033.1
Uncharacterized conserved protein YkwD, contains CAP (CSP/antigen 5/PR1) domain.
  
    0.406
SEJ84740.1
Hypothetical protein.
  
     0.404
Your Current Organism:
Pseudomonas oleovorans
NCBI taxonomy Id: 301
Other names: ATCC 17440 [[Pseudomonas pseudoalcaligenes]], ATCC 8062, CCUG 2087, CCUG 51525 [[Pseudomonas pseudoalcaligenes]], CFBP 2435 [[Pseudomonas pseudoalcaligenes]], CFBP 5589, CIP 59.11, CIP 66.14 [[Pseudomonas pseudoalcaligenes]], DSM 50188 [[Pseudomonas pseudoalcaligenes]], IFO 13583, IFO 14167 [[Pseudomonas pseudoalcaligenes]], JCM 11598, JCM 5968 [[Pseudomonas pseudoalcaligenes]], LMG 2229, LMG:2229, NBRC 13583, NBRC 14167 [[Pseudomonas pseudoalcaligenes]], NCCB 76045 [[Pseudomonas pseudoalcaligenes]], NCIB 6576, NCIMB 6576, NCTC 10692, NCTC 10860 [[Pseudomonas pseudoalcaligenes]], NRRL B-778, P. oleovorans, Pseudomonas pseudoalcaligenes, Pseudomonas pseudoalcaligenes subsp. pseudoalcaligenes, Pseudomonas sp. MGY01
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.