STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rimMRibosome maturation factor RimM; Essential for efficient processing of 16S rRNA; Derived by automated computational analysis using gene prediction method: Protein Homology. (179 aa)    
Predicted Functional Partners:
AOP83568.1
30S ribosomal protein S16; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.984
AOP83566.1
tRNA (guanosine(37)-N1)-methyltransferase TrmD; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.983
AOP83565.1
50S ribosomal protein L19; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
 0.974
AOP84274.1
30S ribosomal protein S19; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
 
 0.971
AOP80904.1
30S ribosomal protein S6; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.948
AOP81227.1
30S ribosomal protein S2; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.933
AOP80906.1
30S ribosomal protein S18; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.928
AOP82417.1
Glutamine-hydrolyzing GMP synthase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.925
AOP84178.1
50S ribosomal protein L13; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.918
AOP84286.1
30S ribosomal protein S12; Derived by automated computational analysis using gene prediction method: Protein Homology.
   
  
 0.912
Your Current Organism:
Enterobacter hormaechei oharae
NCBI taxonomy Id: 301102
Other names: CIP 108490, DSM 16687, E. hormaechei subsp. oharae, Enterobacter hormaechei subsp. oharae, Enterobacter hormaechei subsp. oharae Hoffmann et al. 2016, strain 314, strain EN-314, strain EN_314
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.