Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
B4135_0027 | B4135_0028 | B4135_0027 | B4135_0028 | Cell wall-binding protein. | Hypothetical protein; Putative deoxyribonuclease YcfH. | 0.768 |
B4135_0027 | B4135_1623 | B4135_0027 | B4135_1623 | Cell wall-binding protein. | Hypothetical protein. | 0.659 |
B4135_0027 | B4135_2336 | B4135_0027 | B4135_2336 | Cell wall-binding protein. | Hypothetical protein. | 0.925 |
B4135_0027 | B4135_2954 | B4135_0027 | B4135_2954 | Cell wall-binding protein. | Hypothetical protein. | 0.709 |
B4135_0027 | B4135_2970 | B4135_0027 | B4135_2970 | Cell wall-binding protein. | FIG025307: hypothetical protein. | 0.689 |
B4135_0027 | B4135_2971 | B4135_0027 | B4135_2971 | Cell wall-binding protein. | YLXX protein. | 0.693 |
B4135_0027 | B4135_2972 | B4135_0027 | B4135_2972 | Cell wall-binding protein. | Division initiation protein. | 0.720 |
B4135_0027 | B4135_3096 | B4135_0027 | B4135_3096 | Cell wall-binding protein. | Membrane proteins related to metalloendopeptidases. | 0.569 |
B4135_0027 | ispE | B4135_0027 | B4135_0017 | Cell wall-binding protein. | 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol. | 0.566 |
B4135_0027 | rsmA | B4135_0027 | B4135_0023 | Cell wall-binding protein. | Hypothetical protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.674 |
B4135_0028 | B4135_0027 | B4135_0028 | B4135_0027 | Hypothetical protein; Putative deoxyribonuclease YcfH. | Cell wall-binding protein. | 0.768 |
B4135_0028 | rsmA | B4135_0028 | B4135_0023 | Hypothetical protein; Putative deoxyribonuclease YcfH. | Hypothetical protein; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits. | 0.823 |
B4135_1623 | B4135_0027 | B4135_1623 | B4135_0027 | Hypothetical protein. | Cell wall-binding protein. | 0.659 |
B4135_1623 | B4135_2336 | B4135_1623 | B4135_2336 | Hypothetical protein. | Hypothetical protein. | 0.879 |
B4135_1623 | B4135_2954 | B4135_1623 | B4135_2954 | Hypothetical protein. | Hypothetical protein. | 0.718 |
B4135_1623 | B4135_3096 | B4135_1623 | B4135_3096 | Hypothetical protein. | Membrane proteins related to metalloendopeptidases. | 0.689 |
B4135_2336 | B4135_0027 | B4135_2336 | B4135_0027 | Hypothetical protein. | Cell wall-binding protein. | 0.925 |
B4135_2336 | B4135_1623 | B4135_2336 | B4135_1623 | Hypothetical protein. | Hypothetical protein. | 0.879 |
B4135_2336 | B4135_2954 | B4135_2336 | B4135_2954 | Hypothetical protein. | Hypothetical protein. | 0.485 |
B4135_2954 | B4135_0027 | B4135_2954 | B4135_0027 | Hypothetical protein. | Cell wall-binding protein. | 0.709 |
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