STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4135_0509Lipoprotein yhcN precursor. (210 aa)    
Predicted Functional Partners:
B4135_3909
Hypothetical protein.
  
    0.836
B4135_0510
Hypothetical protein.
       0.773
B4135_2788
Lipoprotein, putative.
  
   
 0.732
B4135_2007
Spore germination protein YpeB.
  
     0.639
B4135_2549
Uncharacterized protein, -like protein of B.subtilis yhgC.
  
     0.590
B4135_1399
Hypothetical protein.
  
     0.570
B4135_0511
Hypothetical protein.
       0.537
B4135_2085
YMAD protein.
  
     0.529
B4135_3622
Hypothetical protein; Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE).
  
     0.511
B4135_3862
Hypothetical protein; Bacillopeptidase F.
  
     0.506
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.