STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4135_0735Stage III sporulation protein D. (143 aa)    
Predicted Functional Partners:
B4135_1875
Stage III sporulation protein AE.
  
    0.925
B4135_2023
Hypothetical protein; ATPase. Has a role at an early stage in the morphogenesis of the spore coat.
  
  
 0.839
B4135_0006
Stage V sporulation protein T, AbrB family transcriptional regulator (SpoVT).
  
  
 0.828
B4135_0781
Stage II sporulation protein required for processing of pro-sigma-E (SpoIIR).
  
   
 0.822
B4135_1879
Stage III sporulation protein AA.
  
   
 0.812
B4135_2965
Hypothetical protein; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
  
  
 0.810
yabP
FIG007421: forespore shell protein.
  
   
 0.804
B4135_1230
Stage IV sporulation protein.
  
   
 0.804
B4135_1873
Stage III sporulation protein AG.
  
  
 0.801
B4135_3622
Hypothetical protein; Stage II sporulation serine phosphatase for sigma-F activation (SpoIIE).
  
   
 0.799
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.