STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4135_1084Hypothetical protein; Lipid A export ATP-binding/permease protein MsbA. (574 aa)    
Predicted Functional Partners:
B4135_1085
Hypothetical protein; Lipid A export ATP-binding/permease protein MsbA.
 
 
 
0.848
B4135_1082
Hypothetical protein; Transcriptional regulator, MarR family.
       0.773
B4135_0344
Hypothetical protein; Amino acid ABC transporter, ATP-binding protein.
 
     
0.586
B4135_1083
Hypothetical protein.
       0.572
B4135_2137
Hypothetical protein; Multiple sugar ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
 
     
0.447
B4135_1852
Stage V sporulation protein whose disruption leads to the production of immature spores (SpoVK).
    
  0.440
B4135_3830
Cell division protein FtsH.
    
  0.440
B4135_3963
Hypothetical protein; ABC transporter, ATP-binding/permease protein.
 
 
0.438
B4135_1081
Hypothetical protein; Peptidase, M42 family.
       0.435
rpsQ
Hypothetical protein; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA.
  
 
   0.426
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.