STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4135_2247Hypothetical protein; Branched-chain amino acid transport ATP-binding protein LivF (TC 3.A.1.4.1). (234 aa)    
Predicted Functional Partners:
B4135_2245
Hypothetical protein; Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1); Belongs to the binding-protein-dependent transport system permease family.
 
 0.999
B4135_2244
Hypothetical protein; High-affinity branched-chain amino acid transport system permease protein LivH (TC 3.A.1.4.1); Belongs to the binding-protein-dependent transport system permease family.
 
 0.994
B4135_2242
Hypothetical protein; Branched-chain amino acid ABC transporter, amino acid-binding protein (TC 3.A.1.4.1).
 
 
 0.989
B4135_2246
Hypothetical protein; Branched-chain amino acid transport ATP-binding protein LivG (TC 3.A.1.4.1).
 
 
0.986
B4135_1369
UPF0261 protein mll9388.
      0.884
B4135_0186
Hypothetical protein.
 
     
0.880
B4135_2243
Hypothetical protein.
       0.773
B4135_1165
ABC transporter, ATP-binding protein.
 
   
 
0.716
B4135_1338
Hypothetical protein; PBS lyase HEAT-like repeat domain protein.
    
  0.635
B4135_3740
Flagellar motor switch protein FliM.
   
   0.633
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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