STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sufCHypothetical protein; Iron-sulfur cluster assembly ATPase protein SufC. (265 aa)    
Predicted Functional Partners:
B4135_2275
Iron-sulfur cluster assembly protein SufB.
 
 0.999
B4135_2277
Cysteine desulfurase, SufS subfamily; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 0.999
sufD
Iron-sulfur cluster assembly protein SufD.
 
 0.999
B4135_2276
Hypothetical protein; Putative iron-sulfur cluster assembly scaffold protein for SUF system, SufE2.
 
  
 0.978
B4135_3416
PaaD-like protein (DUF59) involved in Fe-S cluster assembly.
 
  
 0.790
B4135_2237
Probable iron binding protein from the HesB_IscA_SufA family; Belongs to the HesB/IscA family.
  
 
 0.646
B4135_2280
Hypothetical protein.
       0.492
B4135_1121
Glutaredoxin and related proteins.
  
  
 0.429
B4135_3816
Serine/threonine protein kinase PrkC, regulator of stationary phase.
     
 0.424
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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