STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
potA-2Hypothetical protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Spermidine/putrescine importer (TC 3.A.1.11.1) family. (370 aa)    
Predicted Functional Partners:
B4135_2350
Hypothetical protein; Spermidine Putrescine ABC transporter permease component PotB (TC 3.A.1.11.1).
 0.998
B4135_2352
Hypothetical protein; ABC transporter, periplasmic spermidine putrescine-binding protein PotD (TC 3.A.1.11.1).
 
 0.995
B4135_2351
Hypothetical protein; Spermidine Putrescine ABC transporter permease component potC (TC_3.A.1.11.1).
 
 
 0.994
B4135_1758
Hypothetical protein; Ferric iron ABC transporter, permease protein.
 
 0.931
B4135_3964
Hypothetical protein; ABC transporter, ATP-binding/permease protein.
 
     
0.832
B4135_1760
Hypothetical protein; Ferric iron ABC transporter, iron-binding protein.
  
 
 0.827
B4135_3192
Hypothetical protein; Osmotically activated L-carnitine/choline ABC transporter, substrate-binding protein OpuCC.
   
  0.775
potA
Hypothetical protein; Part of the ABC transporter complex PotABCD involved in spermidine/putrescine import. Responsible for energy coupling to the transport system.
  
 
 
0.774
B4135_2348
Hypothetical protein; Transcriptional regulator, MerR family, near polyamine transporter.
 
 
 0.731
B4135_3247
Late competence protein ComEC, DNA transport.
  
  
 0.549
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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