STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mraZCell division protein MraZ; Belongs to the MraZ family. (143 aa)    
Predicted Functional Partners:
rsmH
Hypothetical protein; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
  
 0.978
ftsL
Hypothetical protein; Essential cell division protein; Belongs to the FtsL family.
  
    0.792
B4135_1349
Hypothetical protein; SAM-dependent methyltransferase, MraW methylase family.
  
  
 0.780
B4135_2983
Penicillin-binding protein 2B.
 
  
 0.739
flgK
Flagellar hook-associated protein FlgK.
    
   0.624
B4135_2052
Flagellar biosynthesis protein FliS.
    
   0.624
fliE
Hypothetical protein; Flagellar hook-basal body complex protein FliE.
    
   0.624
B4135_2982
Cell division protein FtsI [Peptidoglycan synthetase] / Stage V sporulation protein D (Sporulation-specific penicillin-binding protein).
  
  
 0.554
B4135_3677
Cell division protein FtsK; Belongs to the FtsK/SpoIIIE/SftA family.
  
  
 0.517
pheT
Phenylalanyl-tRNA synthetase beta chain; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
   
   0.506
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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