STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
B4135_3247Late competence protein ComEC, DNA transport. (737 aa)    
Predicted Functional Partners:
B4135_1497
Late competence protein.
 
  
 0.876
B4135_3764
Rossmann fold nucleotide-binding protein Smf possibly involved in DNA uptake.
 
  
 0.876
B4135_0212
Leader peptidase (Prepilin peptidase).
 
  
 0.817
B4135_3249
Late competence protein ComEA, DNA receptor.
 
  
 0.808
B4135_0244
Late competence protein ComGB, access of DNA to ComEA.
  
  
 0.774
B4135_0206
Type IV fimbrial assembly protein PilC.
  
  
 0.773
B4135_0240
Hypothetical protein.
   
  
 0.725
B4135_0207
Hypothetical protein; Type IV pilin PilA.
   
  
 0.718
B4135_0243
Hypothetical protein; Required for transformation and DNA binding.
   
  
 0.718
B4135_3248
dCMP deaminase; Late competence protein ComEB.
 
    0.718
Your Current Organism:
Caldibacillus debilis
NCBI taxonomy Id: 301148
Other names: C. debilis, Caldibacillus debilis (Banat et al. 2004) Coorevits et al. 2012, DSM 16016, Geobacillus debilis, Geobacillus debilis Banat et al. 2004, LMG 23386, LMG:23386, NCIMB 13995, strain R-35653, strain Tf
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.