Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUM70596.1 | mec | ERS852420_00134 | ERS852420_00132 | Bifunctional sulfur carrier protein/thiazole synthase protein. | CysO-cysteine peptidase. | 0.994 |
glpK | mec | ERS852420_00347 | ERS852420_00132 | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | CysO-cysteine peptidase. | 0.991 |
mec | CUM70596.1 | ERS852420_00132 | ERS852420_00134 | CysO-cysteine peptidase. | Bifunctional sulfur carrier protein/thiazole synthase protein. | 0.994 |
mec | glpK | ERS852420_00132 | ERS852420_00347 | CysO-cysteine peptidase. | Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate. | 0.991 |
mec | rplD | ERS852420_00132 | ERS852420_02618 | CysO-cysteine peptidase. | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 0.990 |
mec | rpsC | ERS852420_00132 | ERS852420_02613 | CysO-cysteine peptidase. | BS2; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.990 |
mec | rpsE | ERS852420_00132 | ERS852420_02602 | CysO-cysteine peptidase. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.989 |
mec | rpsH | ERS852420_00132 | ERS852420_02605 | CysO-cysteine peptidase. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.989 |
mec | rpsJ | ERS852420_00132 | ERS852420_02620 | CysO-cysteine peptidase. | BS13; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.989 |
mec | rpsO | ERS852420_00132 | ERS852420_00502 | CysO-cysteine peptidase. | BS18; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.991 |
mec | rpsQ | ERS852420_00132 | ERS852420_02610 | CysO-cysteine peptidase. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.989 |
mec | rpsS | ERS852420_00132 | ERS852420_02615 | CysO-cysteine peptidase. | BS17; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.989 |
rplD | mec | ERS852420_02618 | ERS852420_00132 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | CysO-cysteine peptidase. | 0.990 |
rplD | rpsC | ERS852420_02618 | ERS852420_02613 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | BS2; Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation; Belongs to the universal ribosomal protein uS3 family. | 0.999 |
rplD | rpsE | ERS852420_02618 | ERS852420_02602 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S5; Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body. Belongs to the universal ribosomal protein uS5 family. | 0.999 |
rplD | rpsH | ERS852420_02618 | ERS852420_02605 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S8; One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit; Belongs to the universal ribosomal protein uS8 family. | 0.999 |
rplD | rpsJ | ERS852420_02618 | ERS852420_02620 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | BS13; Involved in the binding of tRNA to the ribosomes. Belongs to the universal ribosomal protein uS10 family. | 0.999 |
rplD | rpsO | ERS852420_02618 | ERS852420_00502 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | BS18; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.998 |
rplD | rpsQ | ERS852420_02618 | ERS852420_02610 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | 30S ribosomal protein S17; One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA. | 0.999 |
rplD | rpsS | ERS852420_02618 | ERS852420_02615 | 50S ribosomal protein L4; Forms part of the polypeptide exit tunnel. | BS17; Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA. | 0.999 |
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