STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM73330.1Uncharacterised protein. (118 aa)    
Predicted Functional Partners:
ygaD
Competence damage-inducible protein A; Belongs to the CinA family.
    
 0.520
metG_1
Methionine--tRNA ligase; Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation.
       0.480
porA
Pyruvate synthase subunit porA.
    
  0.469
CUN07593.1
Uncharacterized protein related to capsule biosynthesis enzymes.
  
 
 0.426
idi_1
Isopentenyl-diphosphate Delta-isomerase.
       0.414
ycfH
Uncharacterized deoxyribonuclease YcfH.
       0.414
CUM73370.1
Uncharacterized protein conserved in bacteria.
       0.402
Your Current Organism:
Roseburia faecis
NCBI taxonomy Id: 301302
Other names: DSM 16840, NCIMB 14031, R. faecis, Roseburia faecis Duncan et al. 2006, strain M72/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.