Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUM77048.1 | CUM77099.1 | ERS852420_00561 | ERS852420_00564 | Uncharacterized protein conserved in bacteria. | Uncharacterized radical SAM protein YgiQ. | 0.576 |
CUM77048.1 | pepD_2 | ERS852420_00561 | ERS852420_00562 | Uncharacterized protein conserved in bacteria. | Cytosol non-specific dipeptidase. | 0.594 |
CUM77048.1 | recU | ERS852420_00561 | ERS852420_00566 | Uncharacterized protein conserved in bacteria. | Holliday junction resolvase recU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.571 |
CUM77048.1 | rluD_1 | ERS852420_00561 | ERS852420_00565 | Uncharacterized protein conserved in bacteria. | Ribosomal large subunit pseudouridine synthase D; Belongs to the pseudouridine synthase RluA family. | 0.572 |
CUM77048.1 | rsuA | ERS852420_00561 | ERS852420_00563 | Uncharacterized protein conserved in bacteria. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.594 |
CUM77099.1 | CUM77048.1 | ERS852420_00564 | ERS852420_00561 | Uncharacterized radical SAM protein YgiQ. | Uncharacterized protein conserved in bacteria. | 0.576 |
CUM77099.1 | pepD_2 | ERS852420_00564 | ERS852420_00562 | Uncharacterized radical SAM protein YgiQ. | Cytosol non-specific dipeptidase. | 0.792 |
CUM77099.1 | recU | ERS852420_00564 | ERS852420_00566 | Uncharacterized radical SAM protein YgiQ. | Holliday junction resolvase recU; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family. | 0.848 |
CUM77099.1 | rluD_1 | ERS852420_00564 | ERS852420_00565 | Uncharacterized radical SAM protein YgiQ. | Ribosomal large subunit pseudouridine synthase D; Belongs to the pseudouridine synthase RluA family. | 0.849 |
CUM77099.1 | rsuA | ERS852420_00564 | ERS852420_00563 | Uncharacterized radical SAM protein YgiQ. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.848 |
cmk | der | ERS852420_00516 | ERS852420_01320 | Cytidylate kinase. | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | 0.982 |
cmk | mnmE_1 | ERS852420_00516 | ERS852420_02217 | Cytidylate kinase. | tRNA modification GTPase MnmE. | 0.686 |
cmk | rsuA | ERS852420_00516 | ERS852420_00563 | Cytidylate kinase. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.804 |
cmk | scpB | ERS852420_00516 | ERS852420_00507 | Cytidylate kinase. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.853 |
der | cmk | ERS852420_01320 | ERS852420_00516 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Cytidylate kinase. | 0.982 |
der | rsuA | ERS852420_01320 | ERS852420_00563 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.753 |
der | scpB | ERS852420_01320 | ERS852420_00507 | GTP-binding protein EngA; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family. | Segregation and condensation protein B; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves. | 0.606 |
exoA | rsuA | ERS852420_02896 | ERS852420_00563 | Exodeoxyribonuclease. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.840 |
mnmE_1 | cmk | ERS852420_02217 | ERS852420_00516 | tRNA modification GTPase MnmE. | Cytidylate kinase. | 0.686 |
mnmE_1 | rsuA | ERS852420_02217 | ERS852420_00563 | tRNA modification GTPase MnmE. | Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family. | 0.582 |
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