STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM86992.1Uncharacterised protein. (29 aa)    
Predicted Functional Partners:
CUM86968.1
Conjugal transfer relaxase TraI.
       0.773
CUM86979.1
Bacterial mobilisation protein (MobC).
       0.773
CUM86957.1
Predicted transcriptional regulator.
       0.545
CUM86910.1
Domain of uncharacterised function (DUF2357).
       0.486
CUM86921.1
Uncharacterised protein.
       0.486
hpaIIM
Modification methylase HpaII.
       0.486
vsr_1
Very short patch repair protein.
       0.474
CUM87006.1
Uncharacterised protein.
       0.402
Your Current Organism:
Roseburia faecis
NCBI taxonomy Id: 301302
Other names: DSM 16840, NCIMB 14031, R. faecis, Roseburia faecis Duncan et al. 2006, strain M72/1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.