STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
penA_2Penicillin-binding protein 2. (652 aa)    
Predicted Functional Partners:
ftsW_3
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.962
penA_1
Penicillin-binding protein 2.
 
  
 
0.953
CUM87289.1
Uncharacterised protein.
 
 
 0.945
ftsW_2
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.925
ftsW_1
Cell division protein FtsW; Belongs to the SEDS family.
 
 0.898
rsmH_1
Ribosomal RNA small subunit methyltransferase H; Specifically methylates the N4 position of cytidine in position 1402 (C1402) of 16S rRNA.
 
  
 0.873
murD
UDP-N-acetylmuramoylalanine--D-glutamate ligase; Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA). Belongs to the MurCDEF family.
 
  
 0.865
pbpA_2
Penicillin-binding protein A.
  
  
0.860
CUM87361.1
Protein required for the initiation of cell division.
 
     0.844
pbpA_1
Penicillin-binding protein A.
  
 
 
0.833
Your Current Organism:
Roseburia faecis
NCBI taxonomy Id: 301302
Other names: DSM 16840, NCIMB 14031, R. faecis, Roseburia faecis Duncan et al. 2006, strain M72/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.