STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
sigCProbable RNA polymerase sigma-C factor; Belongs to the sigma-70 factor family. ECF subfamily. (172 aa)    
Predicted Functional Partners:
ybhF_5
Uncharacterized ABC transporter ATP-binding protein YbhF.
 
    0.831
CUM89228.1
ABC-type transport system involved in multi-copper enzyme maturation%2C permease component.
 
     0.810
CUM89252.1
Uncharacterised protein.
       0.773
sigY
RNA polymerase sigma factor sigY; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.768
sigX_2
RNA polymerase sigma factor sigX; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.718
CUN09138.1
Uncharacterised protein.
 
 
 0.606
sigD_1
Sigma-28.
  
     0.590
rpoC
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.546
cnrH_1
RNA polymerase sigma factor CnrH; Belongs to the sigma-70 factor family.
  
     0.545
rpoB
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 
 0.520
Your Current Organism:
Roseburia faecis
NCBI taxonomy Id: 301302
Other names: DSM 16840, NCIMB 14031, R. faecis, Roseburia faecis Duncan et al. 2006, strain M72/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.