STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
CUM99692.1Predicted outer membrane protein. (1792 aa)    
Predicted Functional Partners:
CUM99679.1
Uncharacterised protein.
 
     0.860
CUM99638.1
DNA primase (bacterial type).
 
   
 0.794
CUM99558.1
Protein of uncharacterised function (DUF3801).
 
     0.782
CUM99484.1
PrgI family protein.
 
     0.777
CUM99509.1
Uncharacterised protein.
 
     0.774
CUM99374.1
Sortase (surface protein transpeptidase).
 
   
 0.761
CUM99600.1
Relaxase/Mobilisation nuclease domain.
 
     0.744
CUM86968.1
Conjugal transfer relaxase TraI.
  
     0.667
CUM99443.1
NlpC/P60 family.
 
     0.654
CUM99741.1
Plasmid segregation protein ParM.
 
     0.651
Your Current Organism:
Roseburia faecis
NCBI taxonomy Id: 301302
Other names: DSM 16840, NCIMB 14031, R. faecis, Roseburia faecis Duncan et al. 2006, strain M72/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.