Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
CUM70596.1 | tenI | ERS852420_00134 | ERS852420_00954 | Bifunctional sulfur carrier protein/thiazole synthase protein. | Regulatory protein tenI. | 0.849 |
CUM70596.1 | thiC_1 | ERS852420_00134 | ERS852420_02187 | Bifunctional sulfur carrier protein/thiazole synthase protein. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.778 |
CUM70596.1 | thiC_2 | ERS852420_00134 | ERS852420_02689 | Bifunctional sulfur carrier protein/thiazole synthase protein. | Phosphomethylpyrimidine synthase. | 0.778 |
CUM70596.1 | thiD | ERS852420_00134 | ERS852420_02714 | Bifunctional sulfur carrier protein/thiazole synthase protein. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.888 |
CUM70596.1 | thiE | ERS852420_00134 | ERS852420_02376 | Bifunctional sulfur carrier protein/thiazole synthase protein. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.849 |
CUM70596.1 | thiG | ERS852420_00134 | ERS852420_00952 | Bifunctional sulfur carrier protein/thiazole synthase protein. | Thiazole synthase; Catalyzes the rearrangement of 1-deoxy-D-xylulose 5-phosphate (DXP) to produce the thiazole phosphate moiety of thiamine. Sulfur is provided by the thiocarboxylate moiety of the carrier protein ThiS. In vitro, sulfur can be provided by H(2)S. | 0.989 |
CUM70596.1 | thiH | ERS852420_00134 | ERS852420_00953 | Bifunctional sulfur carrier protein/thiazole synthase protein. | 2-iminoacetate synthase. | 0.838 |
CUM70596.1 | thiM | ERS852420_00134 | ERS852420_02378 | Bifunctional sulfur carrier protein/thiazole synthase protein. | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.750 |
CUN05013.1 | thiD | ERS852420_02377 | ERS852420_02714 | Predicted membrane protein. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.501 |
CUN05013.1 | thiE | ERS852420_02377 | ERS852420_02376 | Predicted membrane protein. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.830 |
CUN05013.1 | thiM | ERS852420_02377 | ERS852420_02378 | Predicted membrane protein. | Hydroxyethylthiazole kinase; Catalyzes the phosphorylation of the hydroxyl group of 4- methyl-5-beta-hydroxyethylthiazole (THZ); Belongs to the Thz kinase family. | 0.889 |
rsgA | tenI | ERS852420_02759 | ERS852420_00954 | Putative ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | Regulatory protein tenI. | 0.916 |
rsgA | thiD | ERS852420_02759 | ERS852420_02714 | Putative ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.467 |
rsgA | thiE | ERS852420_02759 | ERS852420_02376 | Putative ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.916 |
tenI | CUM70596.1 | ERS852420_00954 | ERS852420_00134 | Regulatory protein tenI. | Bifunctional sulfur carrier protein/thiazole synthase protein. | 0.849 |
tenI | rsgA | ERS852420_00954 | ERS852420_02759 | Regulatory protein tenI. | Putative ribosome biogenesis GTPase RsgA; One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Helps release RbfA from mature subunits. May play a role in the assembly of ribosomal proteins into the subunit. Circularly permuted GTPase that catalyzes slow GTP hydrolysis, GTPase activity is stimulated by the 30S ribosomal subunit; Belongs to the TRAFAC class YlqF/YawG GTPase family. RsgA subfamily. | 0.916 |
tenI | thiC_1 | ERS852420_00954 | ERS852420_02187 | Regulatory protein tenI. | Phosphomethylpyrimidine synthase; Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction. Belongs to the ThiC family. | 0.810 |
tenI | thiC_2 | ERS852420_00954 | ERS852420_02689 | Regulatory protein tenI. | Phosphomethylpyrimidine synthase. | 0.786 |
tenI | thiD | ERS852420_00954 | ERS852420_02714 | Regulatory protein tenI. | Hydroxymethylpyrimidine/phosphomethylpyrimidine kinase. | 0.996 |
tenI | thiE | ERS852420_00954 | ERS852420_02376 | Regulatory protein tenI. | Thiamine-phosphate synthase; Condenses 4-methyl-5-(beta-hydroxyethyl)thiazole monophosphate (THZ-P) and 2-methyl-4-amino-5-hydroxymethyl pyrimidine pyrophosphate (HMP-PP) to form thiamine monophosphate (TMP). Belongs to the thiamine-phosphate synthase family. | 0.940 |
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