STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tlpACytochrome c biogenesis protein tlpA. (297 aa)    
Predicted Functional Partners:
yccM_2
Putative electron transport protein yccM.
 
   
 0.952
yccM_1
Putative electron transport protein yccM.
 
   
 0.803
CUN03336.1
Uncharacterised protein.
 
     0.719
CUN05784.1
G:T/U mismatch-specific DNA glycosylase.
       0.636
porA
Pyruvate synthase subunit porA.
      
 0.549
CUN05743.1
Sensory histidine kinase CreC.
       0.544
mglB_1
D-galactose/ D-glucose-binding protein.
 
     0.455
Your Current Organism:
Roseburia faecis
NCBI taxonomy Id: 301302
Other names: DSM 16840, NCIMB 14031, R. faecis, Roseburia faecis Duncan et al. 2006, strain M72/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.