STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
cph2_7Bacteriophytochrome cph2. (875 aa)    
Predicted Functional Partners:
luxQ
Autoinducer 2 sensor kinase/phosphatase luxQ.
 0.988
cph2_5
Bacteriophytochrome cph2.
 
0.981
CUN02791.1
Uncharacterised protein.
 
 0.959
CUN17002.1
Uncharacterised protein.
 0.879
ycdT
Probable diguanylate cyclase YcdT.
 
 0.842
dosP
Oxygen sensor protein DosP.
 
0.830
cheV
Chemotaxis protein CheV.
  
 
 0.810
cph2_1
Bacteriophytochrome cph2.
 
0.799
yjcC
Uncharacterized membrane protein YjcC.
 
0.795
cph2_2
Bacteriophytochrome cph2.
 
0.791
Your Current Organism:
Roseburia faecis
NCBI taxonomy Id: 301302
Other names: DSM 16840, NCIMB 14031, R. faecis, Roseburia faecis Duncan et al. 2006, strain M72/1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.