STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900166595_00902Unannotated protein. (63 aa)    
Predicted Functional Partners:
GCA_900166595_00903
Unannotated protein.
       0.773
GCA_900166595_00904
Unannotated protein.
       0.603
GCA_900166595_00901
Unannotated protein.
       0.576
GCA_900166595_00905
Unannotated protein.
       0.526
GCA_900166595_00899
Unannotated protein.
       0.453
GCA_900166595_00900
Unannotated protein.
       0.453
GCA_900166595_00898
Unannotated protein.
       0.440
GCA_900166595_00895
Unannotated protein.
       0.427
GCA_900166595_00896
Unannotated protein.
       0.427
GCA_900166595_00897
Unannotated protein.
       0.427
Your Current Organism:
Virgibacillus dokdonensis
NCBI taxonomy Id: 302167
Other names: DSM 16826, KCTC 3933, Ornithinibacillus sp. NY-1, Ornithinibacillus sp. NY-11, Ornithinibacillus sp. NY-6, V. dokdonensis, Virgibacillus dokdonensis Yoon et al. 2005, strain DSW-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.