Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
GCA_900166595_00201 | addA | GCA_900166595_00201 | GCA_900166595_01535 | Unannotated protein. | Unannotated protein; ATP-dependent DNA helicase. | 0.653 |
GCA_900166595_00201 | recD2 | GCA_900166595_00201 | GCA_900166595_02018 | Unannotated protein. | Unannotated protein; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. | 0.508 |
GCA_900166595_01178 | GCA_900166595_01179 | GCA_900166595_01178 | GCA_900166595_01179 | Unannotated protein. | Unannotated protein. | 0.843 |
GCA_900166595_01178 | addA | GCA_900166595_01178 | GCA_900166595_01535 | Unannotated protein. | Unannotated protein; ATP-dependent DNA helicase. | 0.650 |
GCA_900166595_01179 | GCA_900166595_01178 | GCA_900166595_01179 | GCA_900166595_01178 | Unannotated protein. | Unannotated protein. | 0.843 |
GCA_900166595_01179 | addA | GCA_900166595_01179 | GCA_900166595_01535 | Unannotated protein. | Unannotated protein; ATP-dependent DNA helicase. | 0.653 |
GCA_900166595_03600 | addA | GCA_900166595_03600 | GCA_900166595_01535 | Unannotated protein. | Unannotated protein; ATP-dependent DNA helicase. | 0.650 |
addA | GCA_900166595_00201 | GCA_900166595_01535 | GCA_900166595_00201 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein. | 0.653 |
addA | GCA_900166595_01178 | GCA_900166595_01535 | GCA_900166595_01178 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein. | 0.650 |
addA | GCA_900166595_01179 | GCA_900166595_01535 | GCA_900166595_01179 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein. | 0.653 |
addA | GCA_900166595_03600 | GCA_900166595_01535 | GCA_900166595_03600 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein. | 0.650 |
addA | addB | GCA_900166595_01535 | GCA_900166595_01534 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. | 0.999 |
addA | recA | GCA_900166595_01535 | GCA_900166595_02411 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.518 |
addA | recD2 | GCA_900166595_01535 | GCA_900166595_02018 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein; DNA-dependent ATPase and ATP-dependent 5'-3' DNA helicase. Has no activity on blunt DNA or DNA with 3'-overhangs, requires at least 10 bases of 5'-ssDNA for helicase activity; Belongs to the RecD family. RecD-like subfamily. | 0.653 |
addA | sbcC | GCA_900166595_01535 | GCA_900166595_02697 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein. | 0.520 |
addA | sbcD | GCA_900166595_01535 | GCA_900166595_02698 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.614 |
addA | trmK | GCA_900166595_01535 | GCA_900166595_02094 | Unannotated protein; ATP-dependent DNA helicase. | Unannotated protein. | 0.661 |
addB | addA | GCA_900166595_01534 | GCA_900166595_01535 | Unannotated protein; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. | Unannotated protein; ATP-dependent DNA helicase. | 0.999 |
addB | sbcC | GCA_900166595_01534 | GCA_900166595_02697 | Unannotated protein; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. | Unannotated protein. | 0.512 |
addB | sbcD | GCA_900166595_01534 | GCA_900166595_02698 | Unannotated protein; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 1 subfamily. | Unannotated protein; SbcCD cleaves DNA hairpin structures. These structures can inhibit DNA replication and are intermediates in certain DNA recombination reactions. The complex acts as a 3'->5' double strand exonuclease that can open hairpins. It also has a 5' single-strand endonuclease activity; Belongs to the SbcD family. | 0.616 |
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