Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
A21D_01395 | rny | GCA_900166595_00024 | GCA_900166595_02410 | Unannotated protein. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.861 |
A21D_01598 | rny | GCA_900166595_00141 | GCA_900166595_02410 | Unannotated protein. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.730 |
A21D_03574 | rny | GCA_900166595_02409 | GCA_900166595_02410 | Unannotated protein. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.723 |
GCA_900166595_01181 | pnp | GCA_900166595_01181 | GCA_900166595_02437 | Unannotated protein. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.872 |
GCA_900166595_01181 | rnjA | GCA_900166595_01181 | GCA_900166595_02637 | Unannotated protein. | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. | 0.433 |
GCA_900166595_01181 | rny | GCA_900166595_01181 | GCA_900166595_02410 | Unannotated protein. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.601 |
GCA_900166595_01181 | rpsO | GCA_900166595_01181 | GCA_900166595_02438 | Unannotated protein. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.761 |
pfkA | rny | GCA_900166595_01797 | GCA_900166595_02410 | Unannotated protein; Catalyzes the phosphorylation of D-fructose 6-phosphate to fructose 1,6-bisphosphate by ATP, the first committing step of glycolysis. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.724 |
pnp | GCA_900166595_01181 | GCA_900166595_02437 | GCA_900166595_01181 | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Unannotated protein. | 0.872 |
pnp | rnjA | GCA_900166595_02437 | GCA_900166595_02637 | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. | 0.497 |
pnp | rny | GCA_900166595_02437 | GCA_900166595_02410 | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.752 |
pnp | rpsO | GCA_900166595_02437 | GCA_900166595_02438 | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.785 |
pnp | tig | GCA_900166595_02437 | GCA_900166595_01957 | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | Unannotated protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.745 |
rnjA | GCA_900166595_01181 | GCA_900166595_02637 | GCA_900166595_01181 | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. | Unannotated protein. | 0.433 |
rnjA | pnp | GCA_900166595_02637 | GCA_900166595_02437 | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. | Unannotated protein; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction. | 0.497 |
rnjA | rny | GCA_900166595_02637 | GCA_900166595_02410 | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | 0.664 |
rnjA | rpsO | GCA_900166595_02637 | GCA_900166595_02438 | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. | Unannotated protein; Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome. | 0.450 |
rnjA | tig | GCA_900166595_02637 | GCA_900166595_01957 | Unannotated protein; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay; Belongs to the metallo-beta-lactamase superfamily. RNA- metabolizing metallo-beta-lactamase-like family. Bacterial RNase J subfamily. | Unannotated protein; Involved in protein export. Acts as a chaperone by maintaining the newly synthesized protein in an open conformation. Functions as a peptidyl-prolyl cis-trans isomerase; Belongs to the FKBP-type PPIase family. Tig subfamily. | 0.596 |
rny | A21D_01395 | GCA_900166595_02410 | GCA_900166595_00024 | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Unannotated protein. | 0.861 |
rny | A21D_01598 | GCA_900166595_02410 | GCA_900166595_00141 | Unannotated protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family. | Unannotated protein. | 0.730 |
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