STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
A21D_03900Unannotated protein. (252 aa)    
Predicted Functional Partners:
ycnK
Unannotated protein.
 
   
 0.766
A21D_03241
Unannotated protein.
  
     0.757
A21D_03780
Unannotated protein.
  
     0.756
A21D_03763
Unannotated protein.
  
     0.752
A21D_01155
Unannotated protein.
  
     0.752
ccsB
Unannotated protein.
  
    0.746
A21D_02844
Unannotated protein.
  
     0.742
A21D_03366
Unannotated protein.
  
     0.740
A21D_02400
Unannotated protein.
  
     0.739
petD
Unannotated protein; Component of the menaquinol-cytochrome c reductase complex.
  
     0.739
Your Current Organism:
Virgibacillus dokdonensis
NCBI taxonomy Id: 302167
Other names: DSM 16826, KCTC 3933, Ornithinibacillus sp. NY-1, Ornithinibacillus sp. NY-11, Ornithinibacillus sp. NY-6, V. dokdonensis, Virgibacillus dokdonensis Yoon et al. 2005, strain DSW-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.