STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
aacA-aphDUnannotated protein. (139 aa)    
Predicted Functional Partners:
A21D_02573
Unannotated protein.
 
 
 0.643
A21D_02453
Unannotated protein.
 
     0.624
A21D_02012
Unannotated protein.
  
     0.620
GCA_900166595_01218
Unannotated protein.
  
  
 0.526
msrAB
Unannotated protein; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
  
  
 0.503
GCA_900166595_00933
Unannotated protein.
  
   0.499
A21D_00310
Unannotated protein.
       0.480
A21D_00740
Unannotated protein.
  
 
   0.463
fadN
Unannotated protein.
  
 
 0.458
GCA_900166595_02955
Unannotated protein.
 
    0.444
Your Current Organism:
Virgibacillus dokdonensis
NCBI taxonomy Id: 302167
Other names: DSM 16826, KCTC 3933, Ornithinibacillus sp. NY-1, Ornithinibacillus sp. NY-11, Ornithinibacillus sp. NY-6, V. dokdonensis, Virgibacillus dokdonensis Yoon et al. 2005, strain DSW-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.