STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ywqDUnannotated protein. (233 aa)    
Predicted Functional Partners:
cap8A
Unannotated protein.
 
 0.998
ywqE
Unannotated protein.
  
 0.962
GCA_900166595_03412
Unannotated protein.
 
  
 0.876
pglF
Unannotated protein.
 
  
 0.674
azoB
Unannotated protein.
   
 
  0.513
GCA_900166595_03406
Unannotated protein.
 
  
 0.512
guaA
Unannotated protein; Catalyzes the synthesis of GMP from XMP.
   
 
 0.469
GCA_900166595_03739
Unannotated protein.
 
  
 0.465
pkn1
Unannotated protein.
    
 
 0.464
rsbT
Unannotated protein.
  
   0.457
Your Current Organism:
Virgibacillus dokdonensis
NCBI taxonomy Id: 302167
Other names: DSM 16826, KCTC 3933, Ornithinibacillus sp. NY-1, Ornithinibacillus sp. NY-11, Ornithinibacillus sp. NY-6, V. dokdonensis, Virgibacillus dokdonensis Yoon et al. 2005, strain DSW-10
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.