STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
GCA_900166595_04172Unannotated protein. (417 aa)    
Predicted Functional Partners:
GCA_900166595_04178
Unannotated protein.
 
     0.859
GCA_900166595_04181
Unannotated protein.
 
     0.852
GCA_900166595_04169
Unannotated protein.
 
   
 0.833
GCA_900166595_04166
Unannotated protein.
 
     0.823
GCA_900166595_04176
Unannotated protein.
 
     0.823
GCA_900166595_04186
Unannotated protein.
 
     0.816
GCA_900166595_04173
Unannotated protein.
       0.783
GCA_900166595_04174
Unannotated protein.
       0.781
A21D_01258
Unannotated protein.
 
     0.775
GCA_900166595_01896
Unannotated protein.
 
     0.771
Your Current Organism:
Virgibacillus dokdonensis
NCBI taxonomy Id: 302167
Other names: DSM 16826, KCTC 3933, Ornithinibacillus sp. NY-1, Ornithinibacillus sp. NY-11, Ornithinibacillus sp. NY-6, V. dokdonensis, Virgibacillus dokdonensis Yoon et al. 2005, strain DSW-10
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.