u2af2 protein (Pundamilia nyererei) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

u2af2

U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family. (470 aa)

Predicted Functional Partners:

LOC102192541

0.984

LOC102192455

0.984

snrnp70

0.969

zrsr2

0.969

sf1

0.968

sf3b1

0.961

sf3b3

0.960

snrpd2

0.960

snrpe

0.955

snrpa1

0.954

Your Current Organism:

Pundamilia nyererei

NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
LOC102192455	LOC102192541	ENSPNYP00000030504	ENSPNYP00000025370	Uncharacterized protein.	U2 small nuclear RNA auxiliary factor 1.	0.880
LOC102192455	sf1	ENSPNYP00000030504	ENSPNYP00000006057	Uncharacterized protein.	Splicing factor 1.	0.682
LOC102192455	sf3b1	ENSPNYP00000030504	ENSPNYP00000019804	Uncharacterized protein.	Splicing factor 3b, subunit 1.	0.738
LOC102192455	sf3b3	ENSPNYP00000030504	ENSPNYP00000004618	Uncharacterized protein.	Splicing factor 3b, subunit 3.	0.584
LOC102192455	snrnp70	ENSPNYP00000030504	ENSPNYP00000004230	Uncharacterized protein.	Small nuclear ribonucleoprotein 70 (U1).	0.823
LOC102192455	snrpa1	ENSPNYP00000030504	ENSPNYP00000004439	Uncharacterized protein.	Small nuclear ribonucleoprotein polypeptide A.	0.454
LOC102192455	snrpd2	ENSPNYP00000030504	ENSPNYP00000015609	Uncharacterized protein.	Small nuclear ribonucleoprotein Sm D2.	0.480
LOC102192455	snrpe	ENSPNYP00000030504	ENSPNYP00000007302	Uncharacterized protein.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.478
LOC102192455	u2af2	ENSPNYP00000030504	ENSPNYP00000001823	Uncharacterized protein.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.984
LOC102192455	zrsr2	ENSPNYP00000030504	ENSPNYP00000024425	Uncharacterized protein.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.	0.468
LOC102192541	LOC102192455	ENSPNYP00000025370	ENSPNYP00000030504	U2 small nuclear RNA auxiliary factor 1.	Uncharacterized protein.	0.880
LOC102192541	sf1	ENSPNYP00000025370	ENSPNYP00000006057	U2 small nuclear RNA auxiliary factor 1.	Splicing factor 1.	0.682
LOC102192541	sf3b1	ENSPNYP00000025370	ENSPNYP00000019804	U2 small nuclear RNA auxiliary factor 1.	Splicing factor 3b, subunit 1.	0.738
LOC102192541	sf3b3	ENSPNYP00000025370	ENSPNYP00000004618	U2 small nuclear RNA auxiliary factor 1.	Splicing factor 3b, subunit 3.	0.584
LOC102192541	snrnp70	ENSPNYP00000025370	ENSPNYP00000004230	U2 small nuclear RNA auxiliary factor 1.	Small nuclear ribonucleoprotein 70 (U1).	0.823
LOC102192541	snrpa1	ENSPNYP00000025370	ENSPNYP00000004439	U2 small nuclear RNA auxiliary factor 1.	Small nuclear ribonucleoprotein polypeptide A.	0.454
LOC102192541	snrpd2	ENSPNYP00000025370	ENSPNYP00000015609	U2 small nuclear RNA auxiliary factor 1.	Small nuclear ribonucleoprotein Sm D2.	0.480
LOC102192541	snrpe	ENSPNYP00000025370	ENSPNYP00000007302	U2 small nuclear RNA auxiliary factor 1.	Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.	0.478
LOC102192541	u2af2	ENSPNYP00000025370	ENSPNYP00000001823	U2 small nuclear RNA auxiliary factor 1.	U2 snRNP auxiliary factor large subunit; Necessary for the splicing of pre-mRNA. Belongs to the splicing factor SR family.	0.984
LOC102192541	zrsr2	ENSPNYP00000025370	ENSPNYP00000024425	U2 small nuclear RNA auxiliary factor 1.	Zinc finger (CCCH type), RNA-binding motif and serine/arginine rich 2.	0.468