STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
zbtb8osZinc finger and BTB domain containing 8 opposite strand. (162 aa)    
Predicted Functional Partners:
rtcb
RNA-splicing ligase RtcB homolog; Catalytic subunit of the tRNA-splicing ligase complex that acts by directly joining spliced tRNA halves to mature-sized tRNAs by incorporating the precursor-derived splice junction phosphate into the mature tRNA as a canonical 3',5'-phosphodiester. May act as an RNA ligase with broad substrate specificity, and may function toward other RNAs.
  
 0.978
etf1
Eukaryotic translation termination factor 1b.
  
    0.874
ddx1
DEAD (Asp-Glu-Ala-Asp) box helicase 1.
     
 0.812
fam98b
Family with sequence similarity 98 member B.
    
 0.768
rtraf
RNA transcription, translation and transport factor.
     
 0.693
LOC102209758
Si:dkeyp-118h3.6.
     
 0.664
gart
Trifunctional purine biosynthetic protein adenosine-3; In the C-terminal section; belongs to the GART family. In the central section; belongs to the AIR synthase family.
    
  0.514
rtca
RNA 3'-terminal phosphate cyclase.
   
 
 0.508
rcl1
RNA terminal phosphate cyclase-like 1.
   
 
 0.495
THUMPD2
THUMP domain containing 2.
      
 0.473
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.