STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
wwp2E3 ubiquitin-protein ligase. (889 aa)    
Predicted Functional Partners:
LOC102195379
E3 ubiquitin-protein ligase.
  
 
0.917
itch
E3 ubiquitin-protein ligase.
  
 
0.917
LOC102197058
Uncharacterized protein; Belongs to the peptidase C14A family.
    
 0.910
traf6
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
    
 0.895
mdm2
MDM2 proto-oncogene; Belongs to the MDM2/MDM4 family.
    
 0.875
rps27a
Ribosomal protein S27a.
    
 0.865
pdgfra
Platelet-derived growth factor receptor, alpha polypeptide; Belongs to the protein kinase superfamily. Tyr protein kinase family. CSF-1/PDGF receptor subfamily.
    
  0.834
ENSPNYP00000005212
Ubiquitin-like domain-containing protein.
    
 0.825
uba52
Ubiquitin-like domain-containing protein.
    
 0.825
LOC106456278
Ubiquitin-like domain-containing protein.
    
 0.825
Your Current Organism:
Pundamilia nyererei
NCBI taxonomy Id: 303518
Other names: Haplochromis nyererei, P. nyererei
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.